1NOH The structure of bacteriophage phi29 scaffolding protein gp7 after prohead assembly date
authors Morais, M.C., Kanamaru, S., Badasso, M.O., Koti, J.S., Owen, B.L., McMurray, C.T., Anderson, D.L., Rossmann, M.G.
compound source
symmetry
R_factor
R_Free 0.29
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
related structures by homologous chain: 1NO4
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceBacteriophage phi29 scaffolding protein gp7 before and after prohead assembly., Morais MC, Kanamaru S, Badasso MO, Koti JS, Owen BA, McMurray CT, Anderson DL, Rossmann MG, Nat Struct Biol 2003 Jul;10(7):572-6. PMID:12778115
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (1noh.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (1noh.pdb2.gz) 22 Kb
  • Biological Unit Coordinates (1noh.pdb3.gz) 43 Kb
  • CSU: Contacts of Structural Units for 1NOH
  • Likely Quarternary Molecular Structure file(s) for 1NOH
  • Structure Factors (452 Kb)
  • Retrieve 1NOH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NOH from S2C, [Save to disk]
  • Re-refined 1noh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1NOH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NOH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NOH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1noha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1nohb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1nohc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1nohd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1noh_D] [1noh_A] [1noh_B] [1noh_C] [1noh]
  • SWISS-PROT database: [P13848]
  • Domain organization of [VG7_BPPH2] by SWISSPFAM
  • Other resources with information on 1NOH
  • Community annotation for 1NOH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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