1NQZ Hydrolase date Jan 23, 2003
title The Structure Of A Coa Pyrophosphatase From D. Radiodurans C With A Magnesium Ion
authors L.W.Kang, S.B.Gabelli, M.A.Bianchet, W.L.Xu, M.J.Bessman, L.M.Amz
compound source
Molecule: Coa Pyrophosphatase (Muttnudix Family Protein)
Chain: A
Ec: 3.6.1.9
Engineered: Yes
Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299
Gene: Dr1184
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.216 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.618 94.066 43.664 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand MG enzyme Hydrolase E.C.3.6.1.9 BRENDA
related structures by homologous chain: 1NQY
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of a coenzyme A pyrophosphatase from Deinococcus radiodurans: a member of the Nudix family., Kang LW, Gabelli SB, Bianchet MA, Xu WL, Bessman MJ, Amzel LM, J Bacteriol 2003 Jul;185(14):4110-8. PMID:12837785
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1nqz.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 1NQZ
  • CSU: Contacts of Structural Units for 1NQZ
  • Likely Quarternary Molecular Structure file(s) for 1NQZ
  • Retrieve 1NQZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NQZ from S2C, [Save to disk]
  • View 1NQZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NQZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NQZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nqza_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nqz] [1nqz_A]
  • SWISS-PROT database: [Q9RV46]
  • Domain organization of [Q9RV46_DEIRA] by SWISSPFAM
  • Other resources with information on 1NQZ
  • Community annotation for 1NQZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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