1NR1	Oxidoreductase	date	Jan 23, 2003
title	Crystal Structure Of The R463a Mutant Of Human Glutamate Deh
authors	S.Banerjee, T.Schmidt, J.Fang, C.A.Stanley, T.J.Smith
compound		source
Molecule: Glutamate Dehydrogenase 1 Chain: A, B, C, D, E, F Ec: 1.4.1.3 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor 0.222 R_Free 0.284
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.920 98.640 124.260 86.48 69.69 60.87
method	X-Ray Diffraction	resolution	3.30 Å
ligand		enzyme	Oxidoreductase E.C.1.4.1.3 BRENDA
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Structural studies on ADP activation of mammalian glutamate dehydrogenase and the evolution of regulation., Banerjee S, Schmidt T, Fang J, Stanley CA, Smith TJ, Biochemistry 2003 Apr 1;42(12):3446-56. PMID:12653548

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (464 Kb) [Save to disk] Biological Unit Coordinates (1nr1.pdb1.gz) 459 Kb CSU: Contacts of Structural Units for 1NR1 Likely Quarternary Molecular Structure file(s) for 1NR1 Retrieve 1NR1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1NR1 from S2C, [Save to disk]

View 1NR1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1NR1

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1NR1, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1nr1a2, region A:10-212 [Jmol] [rasmolscript] [script source]     - Domain d1nr1a1, region A:213-505 [Jmol] [rasmolscript] [script source]     - Domain d1nr1b2, region B:10-212 [Jmol] [rasmolscript] [script source]     - Domain d1nr1b1, region B:213-505 [Jmol] [rasmolscript] [script source]     - Domain d1nr1c2, region C:10-212 [Jmol] [rasmolscript] [script source]     - Domain d1nr1c1, region C:213-505 [Jmol] [rasmolscript] [script source]     - Domain d1nr1d2, region D:10-212 [Jmol] [rasmolscript] [script source]     - Domain d1nr1d1, region D:213-505 [Jmol] [rasmolscript] [script source]     - Domain d1nr1e2, region E:10-212 [Jmol] [rasmolscript] [script source]     - Domain d1nr1e1, region E:213-505 [Jmol] [rasmolscript] [script source]     - Domain d1nr1f2, region F:10-212 [Jmol] [rasmolscript] [script source]     - Domain d1nr1f1, region F:213-505 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1nr1_C] [1nr1_B] [1nr1_A] [1nr1_D] [1nr1_F] [1nr1] [1nr1_E] SWISS-PROT database: [P00367] Domain organization of [DHE3_HUMAN] by SWISSPFAM Domain found in 1NR1: [ELFV_dehydrog ] by SMART

Other resources with information on 1NR1

Community annotation for 1NR1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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