1NR7	Oxidoreductase	date	Jan 23, 2003
title	Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
authors	S.Banerjee, T.Schmidt, J.Fang, C.A.Stanley, T.J.Smith
compound		source
Molecule: Glutamate Dehydrogenase 1 Chain: A, B, C, D, E, F, G, H, I, J, K, L Ec: 1.4.1.3		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913 Organ: Liver Organelle: Mitochondria
symmetry	Space Group: P 21 21 21	R_factor 0.218 R_Free 0.301
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.460 172.060 440.750 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.30 Å
ligand		enzyme	Oxidoreductase E.C.1.4.1.3 BRENDA
Gene Ontology	Chain Function Process Component F, A, J, K, E, B, H, C, D, I, G, L
Primary reference	Structural studies on ADP activation of mammalian glutamate dehydrogenase and the evolution of regulation., Banerjee S, Schmidt T, Fang J, Stanley CA, Smith TJ, Biochemistry 2003 Apr 1;42(12):3446-56. PMID:12653548

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (932 Kb) [Save to disk] Biological Unit Coordinates (1nr7.pdb1.gz) 469 Kb Biological Unit Coordinates (1nr7.pdb2.gz) 467 Kb Biological Unit Coordinates (1nr7.pdb3.gz) 927 Kb CSU: Contacts of Structural Units for 1NR7 Likely Quarternary Molecular Structure file(s) for 1NR7 Retrieve 1NR7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1NR7 from S2C, [Save to disk]

View 1NR7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1NR7

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1NR7, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1nr7a1, region A:209-501 [Jmol] [rasmolscript] [script source]     - Domain d1nr7a2, region A:6-208 [Jmol] [rasmolscript] [script source]     - Domain d1nr7b1, region B:209-501 [Jmol] [rasmolscript] [script source]     - Domain d1nr7b2, region B:6-208 [Jmol] [rasmolscript] [script source]     - Domain d1nr7c1, region C:209-501 [Jmol] [rasmolscript] [script source]     - Domain d1nr7c2, region C:6-208 [Jmol] [rasmolscript] [script source]     - Domain d1nr7d1, region D:209-501 [Jmol] [rasmolscript] [script source]     - Domain d1nr7d2, region D:6-208 [Jmol] [rasmolscript] [script source]     - Domain d1nr7e1, region E:209-501 [Jmol] [rasmolscript] [script source]     - Domain d1nr7e2, region E:6-208 [Jmol] [rasmolscript] [script source]     - Domain d1nr7f1, region F:209-501 [Jmol] [rasmolscript] [script source]     - Domain d1nr7f2, region F:6-208 [Jmol] [rasmolscript] [script source]     - Domain d1nr7g1, region G:209-501 [Jmol] [rasmolscript] [script source]     - Domain d1nr7g2, region G:6-208 [Jmol] [rasmolscript] [script source]     - Domain d1nr7h1, region H:209-501 [Jmol] [rasmolscript] [script source]     - Domain d1nr7h2, region H:6-208 [Jmol] [rasmolscript] [script source]     - Domain d1nr7i1, region I:209-501 [Jmol] [rasmolscript] [script source]     - Domain d1nr7i2, region I:6-208 [Jmol] [rasmolscript] [script source]     - Domain d1nr7j1, region J:209-501 [Jmol] [rasmolscript] [script source]     - Domain d1nr7j2, region J:6-208 [Jmol] [rasmolscript] [script source]     - Domain d1nr7k1, region K:209-501 [Jmol] [rasmolscript] [script source]     - Domain d1nr7k2, region K:6-208 [Jmol] [rasmolscript] [script source]     - Domain d1nr7l1, region L:209-501 [Jmol] [rasmolscript] [script source]     - Domain d1nr7l2, region L:6-208 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1nr7_D] [1nr7_J] [1nr7_G] [1nr7_I] [1nr7_L] [1nr7_H] [1nr7_B] [1nr7_F] [1nr7] [1nr7_A] [1nr7_C] [1nr7_K] [1nr7_E] SWISS-PROT database: [P00366] Domain organization of [DHE3_BOVIN] by SWISSPFAM Domain found in 1NR7: [ELFV_dehydrog ] by SMART

Other resources with information on 1NR7

Community annotation for 1NR7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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