1NS3 STRUCTURE OF HCV PROTEASE (BK STRAIN) date
authors Yan, Y., Munshi, S., Chen, Z.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand ZN enzyme
related structures by homologous chain: 1RGQ, 1RTL
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceComplex of NS3 protease and NS4A peptide of BK strain hepatitis C virus: a 2.2 A resolution structure in a hexagonal crystal form., Yan Y, Li Y, Munshi S, Sardana V, Cole JL, Sardana M, Steinkuehler C, Tomei L, De Francesco R, Kuo LC, Chen Z, Protein Sci 1998 Apr;7(4):837-47. PMID:9568891
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (1ns3.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (1ns3.pdb2.gz) 29 Kb
  • Biological Unit Coordinates (1ns3.pdb3.gz) 29 Kb
  • Biological Unit Coordinates (1ns3.pdb4.gz) 330 Kb
  • LPC: Ligand-Protein Contacts for 1NS3
  • CSU: Contacts of Structural Units for 1NS3
  • Likely Quarternary Molecular Structure file(s) for 1NS3
  • Retrieve 1NS3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NS3 from S2C, [Save to disk]
  • View 1NS3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NS3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NS3, from MSDmotif at EBI
  • Genome occurence of 1NS3's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ns3.1, region A:,C [Jmol] [rasmolscript] [script source]
        - Domain d1ns3.2, region B:,D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ns3_B] [1ns3_C] [1ns3] [1ns3_D] [1ns3_A]
  • SWISS-PROT database: [P26663]
  • Domain organization of [POLG_HCVBK] by SWISSPFAM
  • Other resources with information on 1NS3
  • Community annotation for 1NS3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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