1NSP Phosphotransferase date Apr 18, 1995
title Mechanism Of Phosphate Transfer By Nucleoside Diphosphate Ki Ray Structures Of A Phospho-Histidine Intermediate Of The E From Drosophila And Dictyostelium
authors J.Janin, S.Morera, M.Chiadmi, G.Lebras, I.Lascu
compound source
Molecule: Nucleoside Diphosphate Kinase
Chain: A
Ec: 2.7.4.6
Engineered: Yes
Organism_scientific: Dictyostelium Discoideum
Organism_taxid: 44689
symmetry Space Group: P 63 2 2
R_factor 0.188 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.160 75.160 105.930 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand HIP enzyme Transferase E.C.2.7.4.6 BRENDA
related structures by homologous chain: 1HHQ, 1MN7
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMechanism of phosphate transfer by nucleoside diphosphate kinase: X-ray structures of the phosphohistidine intermediate of the enzymes from Drosophila and Dictyostelium., Morera S, Chiadmi M, LeBras G, Lascu I, Janin J, Biochemistry 1995 Sep 5;34(35):11062-70. PMID:7669763
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (1nsp.pdb1.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 1NSP
  • CSU: Contacts of Structural Units for 1NSP
  • Likely Quarternary Molecular Structure file(s) for 1NSP
  • Retrieve 1NSP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NSP from S2C, [Save to disk]
  • View 1NSP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NSP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NSP, from MSDmotif at EBI
  • Genome occurence of 1NSP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nsp__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nsp] [1nsp_A]
  • SWISS-PROT database: [P22887]
  • Domain organization of [NDKC_DICDI] by SWISSPFAM
  • Domain found in 1NSP: [NDK ] by SMART
  • Other resources with information on 1NSP
  • Community annotation for 1NSP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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