1NTS 5'(dCCPUPCPCPUPUP)3':3'(rAGGAGGAAA)5', where P=propynyl date
authors Znosko, B.M., III, T.W.Barnes., Krugh, T.R., Turner, D.H.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 5PC, PDU enzyme
Primary referenceNMR studies of DNA single strands and DNA:RNA hybrids with and without 1-propynylation at C5 of oligopyrimidines., Znosko BM, Barnes TW 3rd, Krugh TR, Turner DH, J Am Chem Soc 2003 May 21;125(20):6090-7. PMID:12785839
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (1nts.pdb1.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 1NTS
  • CSU: Contacts of Structural Units for 1NTS
  • Original NMR restraints for 1NTS from PDB
  • Retrieve 1NTS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NTS from S2C, [Save to disk]
    • View 1NTS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NTS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NTS, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nts_A] [1nts_B] [1nts]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1NTS
  • Community annotation for 1NTS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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