1NU2 Signaling Protein date Jan 30, 2003
title Crystal Structure Of The Murine Disabled-1 (Dab1) Ptb Domain Peptide-Pi-4,5p2 Ternary Complex
authors P.C.Stolt, H.Jeon, H.K.Song, J.Herz, M.J.Eck, S.C.Blacklow
compound source
Molecule: Disabled Homolog 1
Chain: A
Fragment: Residues 23-174
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Dab1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Gateway Pdest15

Molecule: Peptide Derived From Murine Apolipoprotein E Rece
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: Created By Peptide Synthesis
symmetry Space Group: P 21 21 21
R_factor 0.204 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.270 45.984 89.808 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand I3P enzyme
related structures by homologous chain: 1NTV, 1P3R
Primary referenceOrigins of peptide selectivity and phosphoinositide binding revealed by structures of disabled-1 PTB domain complexes., Stolt PC, Jeon H, Song HK, Herz J, Eck MJ, Blacklow SC, Structure (Camb) 2003 May;11(5):569-79. PMID:12737822
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (1nu2.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1NU2
  • CSU: Contacts of Structural Units for 1NU2
  • Likely Quarternary Molecular Structure file(s) for 1NU2
  • Structure Factors (136 Kb)
  • Retrieve 1NU2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NU2 from S2C, [Save to disk]
  • Re-refined 1nu2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1NU2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NU2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NU2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nu2a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nu2_B] [1nu2_A] [1nu2]
  • SWISS-PROT database: [P97318]
  • Domain organization of [DAB1_MOUSE] by SWISSPFAM
  • Domain found in 1NU2: [PTB ] by SMART
  • Other resources with information on 1NU2
  • Community annotation for 1NU2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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