1NYE	Structural Genomics, Unknown Function	date	Feb 12, 2003
title	Crystal Structure Of Osmc From E. Coli
authors	D.H.Shin, I.G.Choi, D.Busso, J.Jancarik, H.Yokota, R.Kim, S.H.Ki Berkeley Structural Genomics Center (Bsgc)
compound		source
Molecule: Osmotically Inducible Protein C Chain: A, B, C, D, E, F Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Osmc Or B1482 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834(De3)Psjs1244 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pskb3
symmetry	Space Group: P 1 21 1	R_factor 0.218 R_Free 0.277
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.529 90.291 112.677 90.00 93.90 90.00
method	X-Ray Diffraction	resolution	2.40 Å
related structures	by homologous chain: 1QWI
Gene Ontology	Chain Function Process Component F, A, D, C, E, B peroxidase activity antioxidant activity peroxiredoxin activity
Primary reference	Structure of OsmC from Escherichia coli: a salt-shock-induced protein., Shin DH, Choi IG, Busso D, Jancarik J, Yokota H, Kim R, Kim SH, Acta Crystallogr D Biol Crystallogr 2004 May;60(Pt 5):903-11. Epub 2004, Apr 21. PMID:15103136

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk] Biological Unit Coordinates (1nye.pdb1.gz) 44 Kb Biological Unit Coordinates (1nye.pdb2.gz) 50 Kb Biological Unit Coordinates (1nye.pdb3.gz) 49 Kb Biological Unit Coordinates (1nye.pdb4.gz) 139 Kb Biological Unit Coordinates (1nye.pdb5.gz) 138 Kb Biological Unit Coordinates (1nye.pdb6.gz) 138 Kb CSU: Contacts of Structural Units for 1NYE Likely Quarternary Molecular Structure file(s) for 1NYE Structure Factors (473 Kb) Retrieve 1NYE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1NYE from S2C, [Save to disk] Re-refined 1nye structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1NYE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1NYE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1NYE, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1nyea_, region A [Jmol] [rasmolscript] [script source]     - Domain d1nyeb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1nyec_, region C [Jmol] [rasmolscript] [script source]     - Domain d1nyed_, region D [Jmol] [rasmolscript] [script source]     - Domain d1nyee_, region E [Jmol] [rasmolscript] [script source]     - Domain d1nyef_, region F [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1nye_D] [1nye_F] [1nye] [1nye_C] [1nye_A] [1nye_B] [1nye_E] SWISS-PROT database: [P0C0L2] Domain organization of [OSMC_ECOLI] by SWISSPFAM

Other resources with information on 1NYE

Community annotation for 1NYE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---