1O0L Apoptosis date Feb 22, 2003
title The Structure Of Bcl-W Reveals A Role For The C-Terminal Res Modulating Biological Activity
authors M.G.Hinds, M.Lackmann, G.L.Skea, P.J.Harrison, D.C.S.Huang, C.L.D
compound source
Molecule: Apoptosis Regulator Bcl-W
Chain: A
Synonym: Bcl2-Like 2 Protein
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcl2l2 Or Bclw Or Kiaa0271
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-3
methodSolution NMR
related structures by homologous chain: 1MK3
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of Bcl-w reveals a role for the C-terminal residues in modulating biological activity., Hinds MG, Lackmann M, Skea GL, Harrison PJ, Huang DC, Day CL, EMBO J 2003 Apr 1;22(7):1497-507. PMID:12660157
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (944 Kb) [Save to disk]
  • Biological Unit Coordinates (1o0l.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 1O0L
  • Retrieve 1O0L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O0L from S2C, [Save to disk]
    • View 1O0L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1O0L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O0L, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o0la_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o0l] [1o0l_A]
  • SWISS-PROT database: [Q92843]
  • Belongs to the bcl-2 (bcl-2) family according to TCDB.
  • Domain organization of [B2CL2_HUMAN] by SWISSPFAM
  • Domains found in 1O0L: [BCL] [BH4 ] by SMART
    • Other resources with information on 1O0L
  • Community annotation for 1O0L at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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