1O0X Crystal structure of Methionine aminopeptidase (TM1478) from Thermotoga maritima at 1.90 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of a methionine aminopeptidase (TM1478) from Thermotoga maritima at 1.9 A resolution., Spraggon G, Schwarzenbacher R, Kreusch A, McMullan D, Brinen LS, Canaves JM, Dai X, Deacon AM, Elsliger MA, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kuhn P, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Rezezadeh F, Robb A, Sims E, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Lesley SA, Wilson IA, Proteins 2004 Aug 1;56(2):396-400. PMID:15211524
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1o0x.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 1O0X
  • Likely Quarternary Molecular Structure file(s) for 1O0X
  • Structure Factors (149 Kb)
  • Retrieve 1O0X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O0X from S2C, [Save to disk]
  • Re-refined 1o0x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1O0X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1O0X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O0X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o0xa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o0x_A] [1o0x]
  • SWISS-PROT database: [Q9X1I7]
  • Domain organization of [Q9X1I7_THEMA] by SWISSPFAM
    • Other resources with information on 1O0X
  • Community annotation for 1O0X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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