1O1Z	Crystal structure of glycerophosphodiester phosphodiesterase (GDPD) (TM1621) from Thermotoga maritima at 1.60 A resolution	date
authors	JCSG, Joint.Center.for.Structural.Genomics.
compound		source
symmetry		R_factor R_Free 0.18
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.60
ligand	NA	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of a glycerophosphodiester phosphodiesterase (GDPD) from Thermotoga maritima (TM1621) at 1.60 A resolution., Santelli E, Schwarzenbacher R, McMullan D, Biorac T, Brinen LS, Canaves JM, Cambell J, Dai X, Deacon AM, Elsliger MA, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Rezezadeh F, Robb A, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA, Proteins 2004 Jul 1;56(1):167-70. PMID:15162496

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (1o1z.pdb1.gz) 46 Kb LPC: Ligand-Protein Contacts for 1O1Z CSU: Contacts of Structural Units for 1O1Z Likely Quarternary Molecular Structure file(s) for 1O1Z Structure Factors (257 Kb) Retrieve 1O1Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1O1Z from S2C, [Save to disk] Re-refined 1o1z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1O1Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1O1Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1O1Z, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1o1za_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1o1z_A] [1o1z] SWISS-PROT database: [Q9X1V6] Domain organization of [Q9X1V6_THEMA] by SWISSPFAM

Other resources with information on 1O1Z

Community annotation for 1O1Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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