1O2D Crystal structure of Alcohol dehydrogenase, iron-containing (TM0920) from Thermotoga maritima at 1.30 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.17
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.30
ligand FE, MSE, NAP, TRS enzyme
note 1O2D supersedes 1J5R
related structures by homologous chain: 1VHD
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of an iron-containing 1,3-propanediol dehydrogenase (TM0920) from Thermotoga maritima at 1.3 A resolution., Schwarzenbacher R, von Delft F, Canaves JM, Brinen LS, Dai X, Deacon AM, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Guda C, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MA, Miller MD, Morse A, Moy K, Ouyang J, Page R, Robb A, Rodrigues K, Selby TL, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA, Proteins 2004 Jan 1;54(1):174-7. PMID:14705036
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (1o2d.pdb1.gz) 131 Kb
  • Biological Unit Coordinates (1o2d.pdb2.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 1O2D
  • CSU: Contacts of Structural Units for 1O2D
  • Likely Quarternary Molecular Structure file(s) for 1O2D
  • Structure Factors (1212 Kb)
  • Retrieve 1O2D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O2D from S2C, [Save to disk]
  • Re-refined 1o2d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1O2D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1O2D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1O2D 1O2DA 1O2DB from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O2D, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o2da_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1o2db_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o2d] [1o2d_B] [1o2d_A]
  • SWISS-PROT database: [Q9X022]
  • Domain organization of [Q9X022_THEMA] by SWISSPFAM
    • Other resources with information on 1O2D
  • Community annotation for 1O2D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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