1O50 Crystal structure of a cbs domain-containing protein (tm0935) from thermotoga maritima at 1.87 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.25495
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.87
note 1O50 is a representative structure
Primary referenceCrystal structure of a tandem cystathionine-beta-synthase (CBS) domain protein (TM0935) from Thermotoga maritima at 1.87 A resolution., Miller MD, Schwarzenbacher R, von Delft F, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Cambell J, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Morse A, Moy K, Ouyang J, Page R, Quijano K, Robb A, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA, Proteins 2004 Oct 1;57(1):213-7. PMID:15326606
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1o50.pdb1.gz) 54 Kb
  • CSU: Contacts of Structural Units for 1O50
  • Likely Quarternary Molecular Structure file(s) for 1O50
  • Structure Factors (194 Kb)
  • Retrieve 1O50 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O50 from S2C, [Save to disk]
  • Re-refined 1o50 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1O50 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1O50
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O50, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o50a1, region A:-2-69 [Jmol] [rasmolscript] [script source]
        - Domain d1o50a2, region A:77-145 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o50_A] [1o50]
  • SWISS-PROT database: [Q9X033]
  • Domain organization of [Q9X033_THEMA] by SWISSPFAM
  • Domain found in 1O50: [CBS ] by SMART
    • Other resources with information on 1O50
  • Community annotation for 1O50 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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