1O58 Crystal structure of O-acetylserine sulfhydrylase (TM0665) from Thermotoga maritima at 1.80 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.19807
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand PO4 enzyme
note 1O58 is a representative structure and supersedes 1J6N
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of O-acetylserine sulfhydrylase (TM0665) from Thermotoga maritima at 1.8 A resolution., Heine A, Canaves JM, von Delft F, Brinen LS, Dai X, Deacon AM, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Guda C, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MA, Miller MD, Morse A, Moy K, Ouyang J, Page R, Robb A, Rodrigues K, Schwarzenbacher R, Selby TL, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA, Proteins 2004 Aug 1;56(2):387-91. PMID:15211522
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (192 Kb) [Save to disk]
  • Biological Unit Coordinates (1o58.pdb1.gz) 185 Kb
  • LPC: Ligand-Protein Contacts for 1O58
  • CSU: Contacts of Structural Units for 1O58
  • Likely Quarternary Molecular Structure file(s) for 1O58
  • Structure Factors (1215 Kb)
  • Retrieve 1O58 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O58 from S2C, [Save to disk]
  • Re-refined 1o58 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1O58 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1O58
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O58, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o58a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1o58b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1o58c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1o58d_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o58] [1o58_A] [1o58_B] [1o58_D] [1o58_C]
  • SWISS-PROT database: [Q9WZD3]
  • Domain organization of [Q9WZD3_THEMA] by SWISSPFAM
  • Other resources with information on 1O58
  • Community annotation for 1O58 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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