1O59	Crystal structure of Allantoicase (yir029w) from Saccharomyces cerevisiae at 2.40 A resolution	date
authors	JCSG, Joint.Center.for.Structural.Genomics.
compound		source
symmetry		R_factor R_Free 0.22238
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.40
ligand	MSE	enzyme
related structures	by homologous chain: 1SG3
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of an allantoicase (YIR029W) from Saccharomyces cerevisiae at 2.4 A resolution., Xu Q, Schwarzenbacher R, Page R, Sims E, Abdubek P, Ambing E, Biorac T, Brinen LS, Cambell J, Canaves JM, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Quijano K, Reyes R, Rezezadeh F, Robb A, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA, Proteins 2004 Aug 15;56(3):619-24. PMID:15229895

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (1o59.pdb1.gz) 56 Kb LPC: Ligand-Protein Contacts for 1O59 CSU: Contacts of Structural Units for 1O59 Likely Quarternary Molecular Structure file(s) for 1O59 Structure Factors (236 Kb) Retrieve 1O59 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1O59 from S2C, [Save to disk] Re-refined 1o59 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1O59 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1O59

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1O59, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1o59a1, region A:0-187 [Jmol] [rasmolscript] [script source]     - Domain d1o59a2, region A:194-343 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1o59] [1o59_A] SWISS-PROT database: [P25335] Domain organization of [ALLC_YEAST] by SWISSPFAM

Other resources with information on 1O59

Community annotation for 1O59 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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