1O5M	Transferase Transferase Inhibitor	date	Sep 26, 2003
title	Structure Of Fpt Bound To The Inhibitor Sch66336
authors	C.L.Strickland, P.C.Weber, A.K.Ganguly
compound		source
Molecule: Protein Farnesyltransferase Alpha Subunit Chain: A Synonym: Caax Farnesyltransferase Alpha Subunit, Ras Protei Prenyltransferase Alpha, Ftase-Alpha; Ec: 2.5.1.- Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Fnta Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Protein Farnesyltransferase Beta Subunit Chain: B Synonym: Caax Farnesyltransferase Beta Subunit, Ras Protein Prenyltransferase Beta, Ftase-Beta; Ec: 2.5.1.- Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Fntb Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 61	R_factor 0.174 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 171.110 171.110 69.310 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	336, FPP, ZN BindingDB	enzyme	Transferase E.C.2.5.1 BRENDA
related structures	by homologous chain: 1FT1, 1O1R
Gene Ontology	Chain Function Process Component A acetylcholine receptor regul... B
Primary reference	Tricyclic farnesyl protein transferase inhibitors: crystallographic and calorimetric studies of structure-activity relationships., Strickland CL, Weber PC, Windsor WT, Wu Z, Le HV, Albanese MM, Alvarez CS, Cesarz D, del Rosario J, Deskus J, Mallams AK, Njoroge FG, Piwinski JJ, Remiszewski S, Rossman RR, Taveras AG, Vibulbhan B, Doll RJ, Girijavallabhan VM, Ganguly AK, J Med Chem 1999 Jun 17;42(12):2125-35. PMID:10377218

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk] Biological Unit Coordinates (1o5m.pdb1.gz) 133 Kb LPC: Ligand-Protein Contacts for 1O5M CSU: Contacts of Structural Units for 1O5M Likely Quarternary Molecular Structure file(s) for 1O5M Retrieve 1O5M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1O5M from S2C, [Save to disk]

View 1O5M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1O5M

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1O5M, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1o5ma_, region A [Jmol] [rasmolscript] [script source]     - Domain d1o5mb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1o5m_B] [1o5m_A] [1o5m] SWISS-PROT database: [Q04631] [Q02293] Domain organization of [FNTA_RAT] [FNTB_RAT] by SWISSPFAM

Other resources with information on 1O5M

Community annotation for 1O5M at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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