1O5W Oxidoreductase date Oct 06, 2003
title The Structure Basis Of Specific Recognitions For Substrates Inhibitors Of Rat Monoamine Oxidase A
authors J.Ma, M.Yoshimura, E.Yamashita, A.Nakagawa, A.Ito, T.Tsukihara
compound source
Molecule: Amine Oxidase [Flavin-Containing] A
Chain: A, B, C, D
Synonym: Monoamine Oxidase, Mao-A
Ec: 1.4.3.4
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Bj2168
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Yep51
symmetry Space Group: P 43 21 2
R_factor 0.220 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
157.560 157.560 257.840 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand FAD, MLG BindingDB enzyme Oxidoreductase E.C.1.4.3.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of rat monoamine oxidase A and its specific recognitions for substrates and inhibitors., Ma J, Yoshimura M, Yamashita E, Nakagawa A, Ito A, Tsukihara T, J Mol Biol 2004 Apr 16;338(1):103-14. PMID:15050826
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (341 Kb) [Save to disk]
  • Biological Unit Coordinates (1o5w.pdb1.gz) 170 Kb
  • Biological Unit Coordinates (1o5w.pdb2.gz) 170 Kb
  • LPC: Ligand-Protein Contacts for 1O5W
  • CSU: Contacts of Structural Units for 1O5W
  • Likely Quarternary Molecular Structure file(s) for 1O5W
  • Structure Factors (493 Kb)
  • Retrieve 1O5W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O5W from S2C, [Save to disk]
  • Re-refined 1o5w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1O5W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1O5W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O5W, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o5wa1, region A:10-298,A:411-520 [Jmol] [rasmolscript] [script source]
        - Domain d1o5wa2, region A:299-410 [Jmol] [rasmolscript] [script source]
        - Domain d1o5wb1, region B:1010-1298,B:1411-1512 [Jmol] [rasmolscript] [script source]
        - Domain d1o5wb2, region B:1299-1410 [Jmol] [rasmolscript] [script source]
        - Domain d1o5wc1, region C:2010-2298,C:2411-2521 [Jmol] [rasmolscript] [script source]
        - Domain d1o5wc2, region C:2299-2410 [Jmol] [rasmolscript] [script source]
        - Domain d1o5wd1, region D:3010-3298,D:3411-3515 [Jmol] [rasmolscript] [script source]
        - Domain d1o5wd2, region D:3299-3410 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o5w_C] [1o5w] [1o5w_B] [1o5w_A] [1o5w_D]
  • SWISS-PROT database: [P21396]
  • Domain organization of [AOFA_RAT] by SWISSPFAM
  • Other resources with information on 1O5W
  • Community annotation for 1O5W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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