1O60	Transferase	date	Oct 23, 2003
title	Crystal Structure Of Kdo-8-Phosphate Synthase
authors	Structural Genomix
compound		source
Molecule: 2-Dehydro-3-Deoxyphosphooctonate Aldolase Chain: A, B, C, D Synonym: Phospho-2- Dehydro-3-Deoxyoctonate Aldolase, 3-Deo Manno-Octulosonic Acid 8- Phosphate Synthetase, Kdo-8-Phosp Synthetase, Kdo 8-P Synthase, Kdops; Ec: 2.5.1.55 Engineered: Yes		Organism_scientific: Haemophilus Influenzae Organism_taxid: 727 Gene: Kdsa, Hi1557 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.207 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.965 92.893 82.301 90.00 116.82 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	MSE	enzyme	Transferase E.C.2.5.1.55 BRENDA
related structures	by homologous chain: 1PHW
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural analysis of a set of proteins resulting from a bacterial genomics project., Badger J, Sauder JM, Adams JM, Antonysamy S, Bain K, Bergseid MG, Buchanan SG, Buchanan MD, Batiyenko Y, Christopher JA, Emtage S, Eroshkina A, Feil I, Furlong EB, Gajiwala KS, Gao X, He D, Hendle J, Huber A, Hoda K, Kearins P, Kissinger C, Laubert B, Lewis HA, Lin J, Loomis K, Lorimer D, Louie G, Maletic M, Marsh CD, Miller I, Molinari J, Muller-Dieckmann HJ, Newman JM, Noland BW, Pagarigan B, Park F, Peat TS, Post KW, Radojicic S, Ramos A, Romero R, Rutter ME, Sanderson WE, Schwinn KD, Tresser J, Winhoven J, Wright TA, Wu L, Xu J, Harris TJ, Proteins 2005 Sep 1;60(4):787-96. PMID:16021622

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk] Biological Unit Coordinates (1o60.pdb1.gz) 174 Kb LPC: Ligand-Protein Contacts for 1O60 CSU: Contacts of Structural Units for 1O60 Likely Quarternary Molecular Structure file(s) for 1O60 Structure Factors (2073 Kb) Retrieve 1O60 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1O60 from S2C, [Save to disk] Re-refined 1o60 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1O60 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1O60

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1O60, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1o60a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1o60b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1o60c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1o60d_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1o60_C] [1o60] [1o60_B] [1o60_A] [1o60_D] SWISS-PROT database: [P45251] Domain organization of [KDSA_HAEIN] by SWISSPFAM

Other resources with information on 1O60

Community annotation for 1O60 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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