1O6B Transferase date Nov 03, 2003
title Crystal Structure Of Phosphopantetheine Adenylyltransferase
authors Structural Genomix
compound source
Molecule: Phosphopantetheine Adenylyltransferase
Chain: A
Synonym: Pantetheine-Phosphate Adenylyltransferase, Ppat, D Coa Pyrophosphorylase;
Ec: 2.7.7.3
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Coad, Bsu15020
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 3 2
R_factor 0.229 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.420 115.420 115.420 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand ADP, CL, MG, MSE, PO4 enzyme Transferase E.C.2.7.7.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of a set of proteins resulting from a bacterial genomics project., Badger J, Sauder JM, Adams JM, Antonysamy S, Bain K, Bergseid MG, Buchanan SG, Buchanan MD, Batiyenko Y, Christopher JA, Emtage S, Eroshkina A, Feil I, Furlong EB, Gajiwala KS, Gao X, He D, Hendle J, Huber A, Hoda K, Kearins P, Kissinger C, Laubert B, Lewis HA, Lin J, Loomis K, Lorimer D, Louie G, Maletic M, Marsh CD, Miller I, Molinari J, Muller-Dieckmann HJ, Newman JM, Noland BW, Pagarigan B, Park F, Peat TS, Post KW, Radojicic S, Ramos A, Romero R, Rutter ME, Sanderson WE, Schwinn KD, Tresser J, Winhoven J, Wright TA, Wu L, Xu J, Harris TJ, Proteins. 2005 Sep 1;60(4):787-96. PMID:16021622
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1o6b.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (1o6b.pdb2.gz) 169 Kb
  • LPC: Ligand-Protein Contacts for 1O6B
  • CSU: Contacts of Structural Units for 1O6B
  • Likely Quarternary Molecular Structure file(s) for 1O6B
  • Structure Factors (471 Kb)
  • Retrieve 1O6B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O6B from S2C, [Save to disk]
  • Re-refined 1o6b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1O6B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1O6B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O6B, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o6ba_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o6b_A] [1o6b]
  • SWISS-PROT database: [O34797]
  • Domain organization of [COAD_BACSU] by SWISSPFAM
  • Other resources with information on 1O6B
  • Community annotation for 1O6B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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