1O82 X-RAY STRUCTURE OF BACTERIOCIN AS-48 AT PH 4.5. SULPHATE BOUND FORM date
authors Sanchez-Barrena, M.J., Martinez-Ripoll, M., Galvez, A., Martinez-Bueno, M., Maqueda, M., Cruz, V., Albert, A.
compound source
symmetry
R_factor
R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.46
ligand GOL, SO4 enzyme
note 1O82 is a representative structure
related structures by homologous chain: 1O83
Primary referenceStructure of bacteriocin AS-48: from soluble state to membrane bound state., Sanchez-Barrena MJ, Martinez-Ripoll M, Galvez A, Valdivia E, Maqueda M, Cruz V, Albert A, J Mol Biol 2003 Nov 28;334(3):541-9. PMID:14623193
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1o82.pdb1.gz) 13 Kb
  • Biological Unit Coordinates (1o82.pdb2.gz) 13 Kb
  • Biological Unit Coordinates (1o82.pdb3.gz) 13 Kb
  • Biological Unit Coordinates (1o82.pdb4.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 1O82
  • CSU: Contacts of Structural Units for 1O82
  • Likely Quarternary Molecular Structure file(s) for 1O82
  • Structure Factors (434 Kb)
  • Retrieve 1O82 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O82 from S2C, [Save to disk]
  • Re-refined 1o82 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1O82 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1O82
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1O82 1O82A 1O82B 1O82C 1O82D from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O82, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o82a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1o82b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1o82c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1o82d_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o82] [1o82_A] [1o82_B] [1o82_C] [1o82_D]
  • SWISS-PROT database: [Q47765]
  • Belongs to the bacteriocin as-48 cyclic polypeptide (bacteriocin as-48) family according to TCDB.
  • Domain organization of [Q47765_ENTFA] by SWISSPFAM
    • Other resources with information on 1O82
  • Community annotation for 1O82 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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