1O8Y Solution structure of SFTI-1(6,5), an acyclic permutant of the proteinase inhibitor SFTI-1, trans-trans-trans conformer (tt-A) date
authors Marx, U.C., Craik, D.J.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 20 Modelsresolution
Primary referenceEnzymatic cyclisation of the potent Bowman-Birk protease inhibitor SFTI-1 and solution structure of an acyclic precursor peptide., Marx UC, Korsinczky ML, Schirra HJ, Jones A, Condie B, Otvos L Jr, Craik DJ, J Biol Chem 2003 Mar 5;. PMID:12621047
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1O8Y
  • Original NMR restraints for 1O8Y from PDB
  • Retrieve 1O8Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O8Y from S2C, [Save to disk]
    • View 1O8Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1O8Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O8Y, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o8ya_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o8y] [1o8y_A]
  • SWISS-PROT database: [Q4GWU5]
  • Domain organization of [SFTI1_HELAN] by SWISSPFAM
    • Other resources with information on 1O8Y
  • Community annotation for 1O8Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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