1O9H rRNA methyltransferase aviRa from Streptomyces viridochromogenes at 2.4A date
authors Mosbacher, T.G., Schulz, G.E.
compound source
symmetry
R_factor
R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
related structures by homologous chain: 1O9G
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the avilamycin resistance-conferring methyltransferase AviRa from Streptomyces viridochromogenes., Mosbacher TG, Bechthold A, Schulz GE, J Mol Biol 2003 May 23;329(1):147-57. PMID:12742024
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1o9h.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 1O9H
  • Likely Quarternary Molecular Structure file(s) for 1O9H
  • Structure Factors (125 Kb)
  • Retrieve 1O9H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O9H from S2C, [Save to disk]
  • Re-refined 1o9h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1O9H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1O9H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O9H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o9ha_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o9h_A] [1o9h]
  • SWISS-PROT database: [Q9F5K5]
  • Domain organization of [Q9F5K5_STRVR] by SWISSPFAM
  • Other resources with information on 1O9H
  • Community annotation for 1O9H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science