1OAX Immune System date Jan 21, 2003
title Fv Structure Of The Ige Spe-7 In Complex With Acenaphthenequinone
authors L.C.James, P.Roversi, D.Tawfik
compound source
Molecule: Immunoglobulin E
Chain: H, I, J, K
Fragment: Fv Region, Residues 1-122
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Other_details: Expressed As Recombinant Fv In E.Coli

Molecule: Immunoglobulin E
Chain: L, M, N, O
Fragment: Fv Region, Residues 1-110
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Other_details: Expressed As Recombinant Fv In E.Coli
symmetry Space Group: P 21 21 21
R_factor 0.238 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.726 78.636 167.564 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.66 Å
ligand ANQ enzyme
related structures by homologous chain: 1JN6, 1OAY, 1UWE
Gene
Ontology
ChainFunctionProcessComponent
O, M, N, L


Primary referenceAntibody multispecificity mediated by conformational diversity., James LC, Roversi P, Tawfik DS, Science. 2003 Feb 28;299(5611):1362-7. PMID:12610298
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (1oax.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (1oax.pdb2.gz) 19 Kb
  • Biological Unit Coordinates (1oax.pdb3.gz) 39 Kb
  • Biological Unit Coordinates (1oax.pdb4.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 1OAX
  • CSU: Contacts of Structural Units for 1OAX
  • Likely Quarternary Molecular Structure file(s) for 1OAX
  • Structure Factors (420 Kb)
  • Retrieve 1OAX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OAX from S2C, [Save to disk]
  • Re-refined 1oax structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OAX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OAX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OAX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oaxh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1oaxi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1oaxj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1oaxk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1oaxl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1oaxm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1oaxn_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1oaxo_, region O [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oax_H] [1oax_J] [1oax_O] [1oax_L] [1oax_M] [1oax_I] [1oax_K] [1oax_N] [1oax]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 1OAX: [IGv ] by SMART
  • Other resources with information on 1OAX
  • Community annotation for 1OAX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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