1OBR Hydrolase date Jun 22, 1996
title Carboxypeptidase T
authors A.Teplyakov, K.Polyakov, G.Obmolova, A.Osterman
compound source
Molecule: Carboxypeptidase T
Chain: A
Ec: 3.4.17.18
 Organism_scientific: Thermoactinomyces Vulgaris
Organism_taxid: 2026
symmetry Space Group: P 63 2 2
R_factor 0.152 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
159.420 159.420 106.860 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand CA, SO4, ZN enzyme Hydrolase E.C.3.4.17.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of carboxypeptidase T from Thermoactinomyces vulgaris., Teplyakov A, Polyakov K, Obmolova G, Strokopytov B, Kuranova I, Osterman A, Grishin N, Smulevitch S, Zagnitko O, Galperina O, et al., Eur J Biochem 1992 Sep 1;208(2):281-8. PMID:1521526
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1obr.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 1OBR
  • CSU: Contacts of Structural Units for 1OBR
  • Likely Quarternary Molecular Structure file(s) for 1OBR
  • Structure Factors (168 Kb)
  • Retrieve 1OBR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OBR from S2C, [Save to disk]
  • Re-refined 1obr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1OBR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OBR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OBR, from MSDmotif at EBI
  • Genome occurence of 1OBR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1obr__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1obr] [1obr_A]
  • SWISS-PROT database: [P29068]
  • Domain organization of [CBPT_THEVU] by SWISSPFAM
  • Domain found in 1OBR: [Zn_pept ] by SMART
    • Other resources with information on 1OBR
  • Community annotation for 1OBR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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