1OD1	Hydrolase Hydrolase Inhibitor	date	Feb 12, 2003
title	Endothiapepsin Pd135,040 Complex
authors	L.Coates, P.T.Erskine, S.Mall, R.S.Gill, S.P.Wood, J.B.Cooper
compound		source
Molecule: Endothiapepsin Chain: A Synonym: Aspartate Protease, Eapa, Epn-1 Ec: 3.4.23.22		Organism_scientific: Cryphonectria Parasitica Organism_common: Chesnut Blight Fungus Organism_taxid: 5116 Other_details: Endothia Parasitica
symmetry	Space Group: P 1 21 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.201 73.249 45.993 90.00 110.10 90.00
method	X-Ray Diffraction	resolution	1.37 Å
ligand	0QS, SO4	enzyme	Hydrolase E.C.3.4.23.22 BRENDA
related structures	by homologous chain: 1OEX, 2ER7
Gene Ontology	Chain Function Process Component A
Primary reference	The structure of endothiapepsin complexed with the gem-diol inhibitor PD-135,040 at 1.37 A., Coates L, Erskine PT, Mall S, Williams PA, Gill RS, Wood SP, Cooper JB, Acta Crystallogr D Biol Crystallogr 2003 Jun;59(Pt 6):978-81. PMID:12777758

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk] Biological Unit Coordinates (1od1.pdb1.gz) 120 Kb LPC: Ligand-Protein Contacts for 1OD1 CSU: Contacts of Structural Units for 1OD1 Likely Quarternary Molecular Structure file(s) for 1OD1 Structure Factors (1096 Kb) Retrieve 1OD1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OD1 from S2C, [Save to disk] Re-refined 1od1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OD1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OD1

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1OD1 1OD1A 1OD1B from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OD1, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1od1a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1m1od1, region D:3-268 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1od1] [1od1_A] SWISS-PROT database: [P11838] Domain organization of [CARP_CRYPA] by SWISSPFAM

Other resources with information on 1OD1

Community annotation for 1OD1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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