1OD6	Transferase	date	Feb 13, 2003
title	The Crystal Structure Of Phosphopantetheine Adenylyltransfer Thermus Thermophilus In Complex With 4'-Phosphopantetheine
authors	H.Takahashi, E.Inagaki, M.Miyano, T.H.Tahirov
compound		source
Molecule: Phosphopantetheine Adenylyltransferase Chain: A Synonym: Ppat Ec: 2.7.7.3 Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 300852 Strain: Hb8 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet 11a
symmetry	Space Group: H 3 2	R_factor 0.196 R_Free 0.201
crystal cell	length a length b length c angle alpha angle beta angle gamma 115.715 115.715 115.661 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	PNS, SO4	enzyme	Transferase E.C.2.7.7.3 BRENDA
note	1OD6 is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	Structure and implications for the thermal stability of phosphopantetheine adenylyltransferase from Thermus thermophilus., Takahashi H, Inagaki E, Fujimoto Y, Kuroishi C, Nodake Y, Nakamura Y, Arisaka F, Yutani K, Kuramitsu S, Yokoyama S, Yamamoto M, Miyano M, Tahirov TH, Acta Crystallogr D Biol Crystallogr 2004 Jan;60(Pt 1):97-104. PMID:14684898

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk] Biological Unit Coordinates (1od6.pdb1.gz) 169 Kb LPC: Ligand-Protein Contacts for 1OD6 CSU: Contacts of Structural Units for 1OD6 Likely Quarternary Molecular Structure file(s) for 1OD6 Structure Factors (479 Kb) Retrieve 1OD6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OD6 from S2C, [Save to disk] Re-refined 1od6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OD6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OD6

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1OD6 from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OD6, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1od6a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1od6] [1od6_A] SWISS-PROT database: [Q5SJS9] Domain organization of [COAD_THET8] by SWISSPFAM

Other resources with information on 1OD6

Community annotation for 1OD6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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