1OD7	Lectin Immnue System	date	Feb 14, 2003
title	N-Terminal Of Sialoadhesin In Complex With Me-A-9-N-(Naphthy Carbonyl)-Amino-9-Deoxy-Neu5ac (Nap Compound)
authors	N.R.Zaccai, K.Maenaka, T.Maenaka, P.R.Crocker, R.Brossmer, S.Kelm E.Y.Jones
compound		source
Molecule: Sialoadhesin Chain: A Fragment: Domain One, Ig-Like V-Type Domain, Residues 20-13 Synonym: Snd1, Sialic Acid Binding Ig-Like Lectin-1, Siglec Engineered: Yes Other_details: Bound To Me-A-9-N-(Naphthyl-2-Carbonyl)-Amin Neu5ac		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Cricetulus Griseus Expression_system_taxid: 10029 Expression_system_cell_line: Cho Cell Expression_system_plasmid: Pee14 Other_details: Cho Cell Stable Expression With Pee14 Plasmi
symmetry	Space Group: P 43 21 2	R_factor 0.192 R_Free 0.272
crystal cell	length a length b length c angle alpha angle beta angle gamma 64.866 64.866 64.051 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	SUW	enzyme
related structures	by homologous chain: 1QFP
Primary reference	Structure-guided design of sialic acid-based Siglec inhibitors and crystallographic analysis in complex with sialoadhesin., Zaccai NR, Maenaka K, Maenaka T, Crocker PR, Brossmer R, Kelm S, Jones EY, Structure (Camb) 2003 May;11(5):557-67. PMID:12737821

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk] Biological Unit Coordinates (1od7.pdb1.gz) 20 Kb LPC: Ligand-Protein Contacts for 1OD7 CSU: Contacts of Structural Units for 1OD7 Likely Quarternary Molecular Structure file(s) for 1OD7 Structure Factors (19 Kb) Retrieve 1OD7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OD7 from S2C, [Save to disk] Re-refined 1od7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OD7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OD7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OD7, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1od7a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1od7] [1od7_A] SWISS-PROT database: [Q62230] Domain organization of [SN_MOUSE] by SWISSPFAM Domain found in 1OD7: [IG ] by SMART

Other resources with information on 1OD7

Community annotation for 1OD7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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