1ODM	Oxidoreductase	date	Feb 19, 2003
title	Isopenicillin N Synthase From Aspergillus Nidulans (Anaerobi Vinylglycine Fe Complex)
authors	J.M.Elkins, P.J.Rutledge, N.I.Burzlaff, I.J.Clifton, R.M.Adlingt P.L.Roach, J.E.Baldwin
compound		source
Molecule: Isopenicillin N Synthase Chain: A Synonym: Isopenicillin N Synthase, Ipns Ec: 1.21.3.1 Engineered: Yes		Organism_scientific: Emericella Nidulans Organism_taxid: 162425 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Nm554 Expression_system_plasmid: Pjb703
symmetry	Space Group: P 21 21 21	R_factor 0.143 R_Free 0.152
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.701 71.393 100.906 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.15 Å
ligand	ASV, FE2, SO4	enzyme	Oxidoreductase E.C.1.21.3.1 BRENDA
note	1ODM is a representative structure
related structures	by homologous chain: 1W04
Gene Ontology	Chain Function Process Component A
Primary reference	Crystallographic studies on the reaction of isopenicillin N synthase with an unsaturated substrate analogue., Elkins JM, Rutledge PJ, Burzlaff NI, Clifton IJ, Adlington RM, Roach PL, Baldwin JE, Org Biomol Chem 2003 May 7;1(9):1455-60. PMID:12926272

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk] Biological Unit Coordinates (1odm.pdb1.gz) 126 Kb LPC: Ligand-Protein Contacts for 1ODM CSU: Contacts of Structural Units for 1ODM Likely Quarternary Molecular Structure file(s) for 1ODM Structure Factors (817 Kb) Retrieve 1ODM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ODM from S2C, [Save to disk] Re-refined 1odm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ODM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ODM

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1ODM from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ODM, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1odma_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1odm] [1odm_A] SWISS-PROT database: [P05326] Domain organization of [IPNS_EMENI] by SWISSPFAM

Other resources with information on 1ODM

Community annotation for 1ODM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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