1ODU	Hydrolase	date	Mar 14, 2003
title	Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase In With Fucose
authors	G.Sulzenbacher, C.Bignon, Y.Bourne, B.Henrissat
compound		source
Molecule: Putative Alpha-L-Fucosidase Chain: A, B Ec: 3.2.1.51 Engineered: Yes Other_details: Orf Tm0306		Organism_scientific: Thermotoga Maritima Organism_taxid: 243274 Strain: Msb8 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector: Pdest17
symmetry	Space Group: H 3 2	R_factor 0.201 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 179.080 179.080 174.692 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	FUL	enzyme	Hydrolase E.C.3.2.1.51 BRENDA
related structures	by homologous chain: 1HL8
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of Thermotoga maritima alpha-L-fucosidase. Insights into the catalytic mechanism and the molecular basis for fucosidosis., Sulzenbacher G, Bignon C, Nishimura T, Tarling CA, Withers SG, Henrissat B, Bourne Y, J Biol Chem 2004 Mar 26;279(13):13119-28. Epub 2004 Jan 8. PMID:14715651

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk] Biological Unit Coordinates (1odu.pdb1.gz) 412 Kb LPC: Ligand-Protein Contacts for 1ODU CSU: Contacts of Structural Units for 1ODU Likely Quarternary Molecular Structure file(s) for 1ODU Structure Factors (373 Kb) Retrieve 1ODU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ODU from S2C, [Save to disk] Re-refined 1odu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ODU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ODU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ODU, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1odua1, region A:357-447 [Jmol] [rasmolscript] [script source]     - Domain d1odua2, region A:7-356 [Jmol] [rasmolscript] [script source]     - Domain d1odub1, region B:357-447 [Jmol] [rasmolscript] [script source]     - Domain d1odub2, region B:7-356 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1odu_B] [1odu_A] [1odu] SWISS-PROT database: [Q9WYE2] Domain organization of [Q9WYE2_THEMA] by SWISSPFAM Domain found in 1ODU: [Alpha_L_fucos ] by SMART

Other resources with information on 1ODU

Community annotation for 1ODU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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