1OFW Electron Transport date Apr 22, 2003
title Three Dimensional Structure Of The Oxidized Form Of Nine Hem Cytochrome C At Ph 7.5
authors I.Bento, V.H.Teixeira, A.M.Baptista, C.M.Soares, P.M.Matias, M.A.
compound source
Molecule: Nine-Heme Cytochrome C
Chain: A, B
Synonym: 9hcc
 Organism_scientific: Desulfovibrio Desulfuricans
Organism_taxid: 876
Atcc: 27774
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.300 105.950 80.370 90.00 103.18 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand ACT, GOL, HEC enzyme
note 1OFW is a representative structure
related structures by homologous chain: 19HC
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


    • Primary referenceRedox-Bohr and other cooperativity effects in the nine-heme cytochrome C from Desulfovibrio desulfuricans ATCC 27774: crystallographic and modeling studies., Bento I, Teixeira VH, Baptista AM, Soares CM, Matias PM, Carrondo MA, J Biol Chem 2003 Sep 19;278(38):36455-69. Epub 2003 May 15. PMID:12750363
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (1ofw.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (1ofw.pdb2.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 1OFW
  • CSU: Contacts of Structural Units for 1OFW
  • Likely Quarternary Molecular Structure file(s) for 1OFW
  • Retrieve 1OFW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OFW from S2C, [Save to disk]
    • View 1OFW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OFW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1OFW 1OFWA 1OFWB from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OFW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ofwa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ofwb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ofw_A] [1ofw] [1ofw_B]
  • SWISS-PROT database: [Q9RN68]
  • Domain organization of [CYC9_DESDA] by SWISSPFAM
    • Other resources with information on 1OFW
  • Community annotation for 1OFW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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