1OFX CRYSTAL STRUCTURE OF AN OKAZAKI FRAGMENT AT 2 ANGSTROMS RESOLUTION date
authors Egli, M., Usman, N., Zhang, S., Rich, A.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand SPM enzyme
Primary referenceCrystal structure of an Okazaki fragment at 2-A resolution., Egli M, Usman N, Zhang SG, Rich A, Proc Natl Acad Sci U S A 1992 Jan 15;89(2):534-8. PMID:1370582
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (1ofx.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 1OFX
  • CSU: Contacts of Structural Units for 1OFX
  • Likely Quarternary Molecular Structure file(s) for 1OFX
  • Retrieve 1OFX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OFX from S2C, [Save to disk]
  • View 1OFX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OFX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OFX, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ofx_B] [1ofx] [1ofx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1OFX
  • Community annotation for 1OFX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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