1OHT Hydrolase date May 31, 2003
title Peptidoglycan Recognition Protein-Lb
authors M.S.Kim, M.Byun, B.H.Oh
compound source
Molecule: Cg14704 Protein
Chain: A
Synonym: Peptidoglycan Recognition Protein
Engineered: Yes
Organism_scientific: Drosophila Melanogaster
Organism_taxid: 7227
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor 0.216 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.561 40.561 337.997 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.0 Å
ligand EDO, MSE, TLA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of peptidoglycan recognition protein LB from Drosophila melanogaster., Kim MS, Byun M, Oh BH, Nat Immunol 2003 Aug;4(8):787-93. PMID:12845326
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1oht.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1OHT
  • CSU: Contacts of Structural Units for 1OHT
  • Likely Quarternary Molecular Structure file(s) for 1OHT
  • Structure Factors (136 Kb)
  • Retrieve 1OHT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OHT from S2C, [Save to disk]
  • Re-refined 1oht structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OHT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OHT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OHT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ohta_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oht] [1oht_A]
  • SWISS-PROT database: [Q8INK6]
  • Domain organization of [PGPLB_DROME] by SWISSPFAM
  • Domains found in 1OHT: [Ami_2] [PGRP ] by SMART
  • Other resources with information on 1OHT
  • Community annotation for 1OHT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science