1OHV Transferase date Jun 02, 2003
title 4-Aminobutyrate-Aminotransferase From Pig
authors P.Storici, T.Schirmer
compound source
Molecule: 4-Aminobutyrate Aminotransferase
Chain: A, B, C, D
Fragment: Residues 29-500
Synonym: Gamma-Amino-N-Butyrate Transaminase, Gaba Transami Aminotransferase, Gaba-At, Gaba-T;
Ec: 2.6.1.19
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Organ: Liver
symmetry Space Group: P 1 21 1
R_factor 0.188 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.597 225.045 70.349 90.00 108.39 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ACT, FES, PLP enzyme Transferase E.C.2.6.1.19 BRENDA
note 1OHV supersedes 1GTX
related structures by homologous chain: 1OHW
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • 4-aminobutyrate transaminase...


  • Primary referenceStructures of gamma-aminobutyric acid (GABA) aminotransferase, a pyridoxal 5'-phosphate, and [2Fe-2S] cluster-containing enzyme, complexed with gamma-ethynyl-GABA and with the antiepilepsy drug vigabatrin., Storici P, De Biase D, Bossa F, Bruno S, Mozzarelli A, Peneff C, Silverman RB, Schirmer T, J Biol Chem. 2004 Jan 2;279(1):363-73. Epub 2003 Oct 8. PMID:14534310
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (301 Kb) [Save to disk]
  • Biological Unit Coordinates (1ohv.pdb1.gz) 149 Kb
  • Biological Unit Coordinates (1ohv.pdb2.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 1OHV
  • CSU: Contacts of Structural Units for 1OHV
  • Likely Quarternary Molecular Structure file(s) for 1OHV
  • Structure Factors (625 Kb)
  • Retrieve 1OHV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OHV from S2C, [Save to disk]
  • Re-refined 1ohv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OHV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OHV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OHV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ohva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ohvb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1ohvc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1ohvd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ohv_B] [1ohv_C] [1ohv_A] [1ohv_D] [1ohv]
  • SWISS-PROT database: [P80147]
  • Domain organization of [GABT_PIG] by SWISSPFAM
  • Other resources with information on 1OHV
  • Community annotation for 1OHV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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