1OIK Oxidoreductase date Jun 18, 2003
title Crystal Structure Of The Alkylsulfatase Atsk, A Non-Heme Fe( Alphaketoglutarate Dependent Dioxygenase In Complex With Fe Alphaketoglutarate And 2-Ethyl-1-Hexanesulfuric Acid
authors I.Mueller, A.Kahnert, T.Pape, T.Dierks, W.Meyer-Klauke, M.A.Kerte
compound source
Molecule: Putative Alkylsulfatase Atsk
Chain: A, D
Synonym: Non-Heme Fe(II) Alpha Ketoglutarate Dependent Diox Alkylsulfatase
Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
Strain: S-313
Other_details: Dsm 6884
symmetry Space Group: I 21 21 21
R_factor 0.199 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.027 141.892 161.718 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.06 Å
ligand AKG, C26, FE2 enzyme
related structures by homologous chain: 1OIH, 1OIJ
Gene
Ontology
ChainFunctionProcessComponent
A, D


Primary referenceCrystal structure of the alkylsulfatase AtsK: insights into the catalytic mechanism of the Fe(II) alpha-ketoglutarate-dependent dioxygenase superfamily., Muller I, Kahnert A, Pape T, Sheldrick GM, Meyer-Klaucke W, Dierks T, Kertesz M, Uson I, Biochemistry. 2004 Mar 23;43(11):3075-88. PMID:15023059
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (1oik.pdb1.gz) 163 Kb
  • LPC: Ligand-Protein Contacts for 1OIK
  • CSU: Contacts of Structural Units for 1OIK
  • Likely Quarternary Molecular Structure file(s) for 1OIK
  • Structure Factors (384 Kb)
  • Retrieve 1OIK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OIK from S2C, [Save to disk]
  • Re-refined 1oik structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OIK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OIK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OIK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oika_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1oikd_, region D [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oik_A] [1oik_D] [1oik]
  • SWISS-PROT database: [Q9WWU5]
  • Domain organization of [Q9WWU5_PSEPU] by SWISSPFAM
  • Other resources with information on 1OIK
  • Community annotation for 1OIK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science