1OJ1 Hydrolase date Jun 28, 2003
title Nonproductive And Novel Binding Modes In Cytotoxic Ribonucle Rana Catesbeiana Of Two Crystal Structures Complexed With ( And D(Apcpgpa)
authors C.J.Tsai, J.H.Liu, Y.D.Liao, L.Y.Chen, P.T.Cheng, Y.J.Sun
compound source
Molecule: Rc-Rnase6 Ribonuclease
Chain: A
Organism_scientific: Rana Catesbeiana
Organism_common: Bull Frog
Organism_taxid: 8400
Organ: Oocytes
symmetry Space Group: P 43 21 2
R_factor 0.203 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.800 61.800 65.960 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CG2, PCA, SO4 enzyme
related structures by homologous chain: 1OJ8
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • endonuclease activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1oj1.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1OJ1
  • CSU: Contacts of Structural Units for 1OJ1
  • Likely Quarternary Molecular Structure file(s) for 1OJ1
  • Structure Factors (52 Kb)
  • Retrieve 1OJ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OJ1 from S2C, [Save to disk]
  • Re-refined 1oj1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OJ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OJ1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OJ1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oj1a_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oj1] [1oj1_A]
  • SWISS-PROT database: [Q9DFY5]
  • Domain organization of [Q9DFY5_RANCA] by SWISSPFAM
  • Domain found in 1OJ1: [RNAse_Pc ] by SMART
  • Other resources with information on 1OJ1
  • Community annotation for 1OJ1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science