1OJ7	Oxidoreductase	date	Jul 03, 2003
title	Structural Genomics, Unknown Function Crystal Structure Of E. Coli K-12 Yqhd
authors	G.Sulzenbacher, S.Perrier, V.Roig-Zamboni, F.Pagot, S.Grisel, A.Salamoni, C.Valencia, C.Bignon, R.Vincentelli, M.Tegoni, C.Cambillau
compound		source
Molecule: Hypothetical Oxidoreductase Yqhd Chain: A, B, C, D Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 83333 Strain: K-12 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector: Pdest17
symmetry	Space Group: P 62	R_factor 0.145 R_Free 0.164
crystal cell	length a length b length c angle alpha angle beta angle gamma 237.925 237.925 66.744 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.0 Å
ligand	BO3, CL, NZQ, ZN	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Crystal structure of E.coli alcohol dehydrogenase YqhD: evidence of a covalently modified NADP coenzyme., Sulzenbacher G, Alvarez K, Van Den Heuvel RH, Versluis C, Spinelli S, Campanacci V, Valencia C, Cambillau C, Eklund H, Tegoni M, J Mol Biol. 2004 Sep 10;342(2):489-502. PMID:15327949

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk] Biological Unit Coordinates (1oj7.pdb1.gz) 141 Kb Biological Unit Coordinates (1oj7.pdb2.gz) 144 Kb LPC: Ligand-Protein Contacts for 1OJ7 CSU: Contacts of Structural Units for 1OJ7 Likely Quarternary Molecular Structure file(s) for 1OJ7 Structure Factors (1957 Kb) Retrieve 1OJ7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OJ7 from S2C, [Save to disk] Re-refined 1oj7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OJ7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OJ7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OJ7, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1oj7a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1oj7b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1oj7c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1oj7d_, region D [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1oj7_B] [1oj7_C] [1oj7_D] [1oj7_A] [1oj7] SWISS-PROT database: [Q46856] Domain organization of [YQHD_ECOLI] by SWISSPFAM

Other resources with information on 1OJ7

Community annotation for 1OJ7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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