1OL1	Transferase Transferase Inhibitor	date	Aug 04, 2003
title	Cyclin A Binding Groove Inhibitor H-Cit-Cit-Leu-Ile-(P-F-Phe
authors	G.Kontopidis, M.Andrews, C.Mcinnes, A.Cowan, H.Powers, L.Innes, A. G.Griffiths, D.Paterson, D.Zheleva, D.Lane, S.Green, M.Walkinsha P.Fischer
compound		source
Molecule: Cell Division Protein Kinase 2 Chain: A, C Synonym: Cyclin-Dependent Kinase 2, P33 Protein Kinase Ec: 2.7.1.37 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
Molecule: Cyclin A2 Chain: B, D Fragment: Residues 173 - 432 Synonym: Cyclin A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Cir-Cir-Leu-Ile-Pff-Nh2 Chain: F, H Engineered: Yes Other_details: Cyclin Groove-Bound Peptide Cit-Cit-Leu-Ile-		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 21	R_factor 0.206 R_Free 0.284
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.498 113.471 154.482 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	CIR, NH2, PFF	enzyme	Transferase E.C.2.7.1.37 BRENDA
related structures	by homologous chain: 1FVV, 1OKU
Gene Ontology	Chain Function Process Component A, C
Primary reference	Insights into cyclin groove recognition: complex crystal structures and inhibitor design through ligand exchange., Kontopidis G, Andrews MJ, McInnes C, Cowan A, Powers H, Innes L, Plater A, Griffiths G, Paterson D, Zheleva DI, Lane DP, Green S, Walkinshaw MD, Fischer PM, Structure (Camb) 2003 Dec;11(12):1537-46. PMID:14656438

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk] Biological Unit Coordinates (1ol1.pdb1.gz) 93 Kb Biological Unit Coordinates (1ol1.pdb2.gz) 93 Kb LPC: Ligand-Protein Contacts for 1OL1 CSU: Contacts of Structural Units for 1OL1 Likely Quarternary Molecular Structure file(s) for 1OL1 Structure Factors (568 Kb) Retrieve 1OL1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OL1 from S2C, [Save to disk] Re-refined 1ol1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OL1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OL1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OL1, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ol1a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1ol1b1, region B:175-309 [Jmol] [rasmolscript] [script source]     - Domain d1ol1b2, region B:310-432 [Jmol] [rasmolscript] [script source]     - Domain d1ol1c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1ol1d1, region D:175-309 [Jmol] [rasmolscript] [script source]     - Domain d1ol1d2, region D:310-432 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ol1_F] [1ol1_H] [1ol1_B] [1ol1_A] [1ol1_C] [1ol1_D] [1ol1] SWISS-PROT database: [P20248] [P24941] Domain organization of [CCNA2_HUMAN] [CDK2_HUMAN] by SWISSPFAM Domains found in 1OL1: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART

Other resources with information on 1OL1

Community annotation for 1OL1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---