1ONR Transferase date Aug 13, 1996
title Structure Of Transaldolase B
authors J.Jia, W.Huang, Y.Lindqvist, G.Schneider
compound source
Molecule: Transaldolase B
Chain: A, B
Ec: 2.2.1.2
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.900 91.300 130.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.87 Å
ligand
enzyme Transferase E.C.2.2.1.2 BRENDA
related structures by homologous chain: 1I2O
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of transaldolase B from Escherichia coli suggests a circular permutation of the alpha/beta barrel within the class I aldolase family., Jia J, Huang W, Schorken U, Sahm H, Sprenger GA, Lindqvist Y, Schneider G, Structure 1996 Jun 15;4(6):715-24. PMID:8805555
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (1onr.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (1onr.pdb2.gz) 55 Kb
  • CSU: Contacts of Structural Units for 1ONR
  • Likely Quarternary Molecular Structure file(s) for 1ONR
  • Structure Factors (564 Kb)
  • Retrieve 1ONR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ONR from S2C, [Save to disk]
  • Re-refined 1onr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ONR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ONR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ONR, from MSDmotif at EBI
  • Genome occurence of 1ONR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1onra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1onrb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1onr_A] [1onr_B] [1onr]
  • SWISS-PROT database: [P0A870]
  • Domain organization of [TALB_ECOLI] by SWISSPFAM
  • Other resources with information on 1ONR
  • Community annotation for 1ONR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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