1OOA	Transcription Rna	date	Mar 03, 2003
title	Crystal Structure Of Nf-Kb(P50)2 Complexed To A High-Affinit Aptamer
authors	D.B.Huang, D.Vu, L.A.Cassiday, J.M.Zimmerman, L.J.Maher Iii, G.Gh
compound		source
Molecule: Rna Aptamer Chain: C, D Fragment: 29-Nt Rna Aptamer Engineered: Yes		Synthetic: Yes Other_details: Synthesis Of The Rna Fragment From The T7 Pr Vitro Transcription;
Molecule: Nuclear Factor Nf-Kappa-B P105 Subunit Chain: A, B Synonym: Dna-Binding Factor Kbf1, Ebp- 1, Nf-Kappa-B1 P84n P98, [Contains: Nuclear Factor Nf- Kappa-B P50 Subunit] Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Nfkb1 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_plasmid: Pet29b
symmetry	Space Group: C 1 2 1	R_factor 0.208 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.753 151.059 95.628 90.00 105.95 90.00
method	X-Ray Diffraction	resolution	2.45 Å
related structures	by homologous chain: 1NFK, 1SVC
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of NF-kappaB (p50)2 complexed to a high-affinity RNA aptamer., Huang DB, Vu D, Cassiday LA, Zimmerman JM, Maher LJ 3rd, Ghosh G, Proc Natl Acad Sci U S A 2003 Aug 5;100(16):9268-73. Epub 2003 Jul 28. PMID:12886018

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk] Biological Unit Coordinates (1ooa.pdb1.gz) 66 Kb Biological Unit Coordinates (1ooa.pdb2.gz) 64 Kb CSU: Contacts of Structural Units for 1OOA Likely Quarternary Molecular Structure file(s) for 1OOA Retrieve 1OOA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OOA from S2C, [Save to disk]

View 1OOA in 3D

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Visual 3D analysis of 1OOA

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OOA, from MSDmotif at EBI Structure summary from SCOR (Structural Classification of RNA) Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ooaa1, region A:251-350 [Jmol] [rasmolscript] [script source]     - Domain d1ooaa2, region A:38-250 [Jmol] [rasmolscript] [script source]     - Domain d1ooab1, region B:251-350 [Jmol] [rasmolscript] [script source]     - Domain d1ooab2, region B:38-250 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ooa] [1ooa_A] [1ooa_C] [1ooa_B] [1ooa_D] SWISS-PROT database: [P25799] Domain organization of [NFKB1_MOUSE] by SWISSPFAM Domain found in 1OOA: [IPT ] by SMART

Other resources with information on 1OOA

Community annotation for 1OOA at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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