1OOT Structural Genomics date Mar 04, 2003
title Crystal Structure Of The Sh3 Domain From A S. Cerevisiae Hyp 40.4 Kda Protein At 1.39 A Resolution
authors P.Kursula, F.Lehmann, Y.H.Song, M.Wilmanns
compound source
Molecule: Hypothetical 40.4 Kda Protein In Pes4-His2 Interg Region;
Chain: A
Fragment: Sh3 Domain
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Yfr024c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pdest-17
symmetry Space Group: P 31 2 1
R_factor 0.132 R_Free 0.170
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.930 39.930 69.490 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.39 Å
ligand CL enzyme
note 1OOT is a representative structure
related structures by homologous chain: 1SSH
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (1oot.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 1OOT
  • CSU: Contacts of Structural Units for 1OOT
  • Likely Quarternary Molecular Structure file(s) for 1OOT
  • Structure Factors (87 Kb)
  • Retrieve 1OOT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OOT from S2C, [Save to disk]
  • Re-refined 1oot structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1OOT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OOT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1OOT from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OOT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oota_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oot] [1oot_A]
  • SWISS-PROT database: [P43603]
  • Domain organization of [LSB3_YEAST] by SWISSPFAM
  • Domain found in 1OOT: [SH3 ] by SMART
    • Other resources with information on 1OOT
  • Community annotation for 1OOT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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