1OPS Antifreeze Protein date Nov 17, 1997
title Ice-Binding Surface On A Type III Antifreeze Protein From Oc
authors D.S.C.Yang, W.C.Hon, S.Bubanko, Y.Xue, J.Seetharaman, C.L.Hew, F.
compound source
Molecule: Type III Antifreeze Protein
Chain: A
Synonym: Type III Afp
Organism_scientific: Macrozoarces Americanus
Organism_common: Ocean Pout
Organism_taxid: 8199
Tissue: Serum
Other_details: Isoform Hplc-3
symmetry Space Group: P 1 21 1
R_factor 0.204 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
23.060 40.790 29.990 90.00 100.60 90.00
method X-Ray Diffractionresolution 2.00 Å
related structures by homologous chain: 9AME
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of the ice-binding surface on a type III antifreeze protein with a "flatness function" algorithm., Yang DS, Hon WC, Bubanko S, Xue Y, Seetharaman J, Hew CL, Sicheri F, Biophys J 1998 May;74(5):2142-51. PMID:9591641
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1ops.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 1OPS
  • Likely Quarternary Molecular Structure file(s) for 1OPS
  • Structure Factors (42 Kb)
  • Retrieve 1OPS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OPS from S2C, [Save to disk]
  • Re-refined 1ops structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OPS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OPS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OPS, from MSDmotif at EBI
  • Genome occurence of 1OPS's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ops__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ops] [1ops_A]
  • SWISS-PROT database: [P19608]
  • Domain organization of [ANP1_MACAM] by SWISSPFAM
  • Domain found in 1OPS: [SAF ] by SMART
  • Other resources with information on 1OPS
  • Community annotation for 1OPS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science