1ORF Hydrolase Hydrolase Inhibitor date Mar 12, 2003
title The Oligomeric Structure Of Human Granzyme A Reveals The Mol Determinants Of Substrate Specificity
authors J.K.Bell, D.H.Goetz, S.Mahrus, J.L.Harris, R.J.Fletterick, C.S.Cr
compound source
Molecule: Granzyme A
Chain: A
Synonym: Cytotoxic T-Lymphocyte Proteinase 1, Hanukkah Fact Factor, Hf, Granzyme 1, Ctl Tryptase, Fragmentin 1;
Ec: 3.4.21.78
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gzma
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: X33
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppiczalphaa
symmetry Space Group: C 2 2 21
R_factor 0.191 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.034 145.022 39.555 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 0G6, SO4 enzyme Hydrolase E.C.3.4.21.78 BRENDA
related structures by homologous chain: 1OP8
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe oligomeric structure of human granzyme A is a determinant of its extended substrate specificity., Bell JK, Goetz DH, Mahrus S, Harris JL, Fletterick RJ, Craik CS, Nat Struct Biol 2003 Jul;10(7):527-34. PMID:12819769
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (1orf.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 1ORF
  • CSU: Contacts of Structural Units for 1ORF
  • Likely Quarternary Molecular Structure file(s) for 1ORF
  • Retrieve 1ORF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ORF from S2C, [Save to disk]
  • View 1ORF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ORF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ORF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1orfa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1orf_A] [1orf] [1orf_B]
  • SWISS-PROT database: [P12544]
  • Domain organization of [GRAA_HUMAN] by SWISSPFAM
  • Domain found in 1ORF: [Tryp_SPc ] by SMART
  • Other resources with information on 1ORF
  • Community annotation for 1ORF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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