1OSH Transcription date Mar 19, 2003
title A Chemical, Genetic, And Structural Analysis Of The Nuclear Receptor Fxr
authors M.Downes, M.A.Verdecia, A.J.Roecker, R.Hughes, J.B.Hogenesch, H.R Woelbern, M.E.Bowman, J.L.Ferrer, A.M.Anisfeld, P.A.Edwards, J.M.Rosenfeld, J.G.A.Alvarez, J.P.Noel, K.C.Nicolaou, R.M.Evans
compound source
Molecule: Bile Acid Receptor
Chain: A
Fragment: Ligand Binding Domain
Synonym: Farnesoid X-Activated Receptor, Farnesol Receptor Retinoid X Receptor-Interacting Protein 14, Rxr-Interacting 14;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr1h4
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis8-3
symmetry Space Group: P 21 21 21
R_factor 0.215 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.656 56.776 117.646 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand FEX BindingDB enzyme
related structures by homologous chain: 1OSV
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA chemical, genetic, and structural analysis of the nuclear bile acid receptor FXR., Downes M, Verdecia MA, Roecker AJ, Hughes R, Hogenesch JB, Kast-Woelbern HR, Bowman ME, Ferrer JL, Anisfeld AM, Edwards PA, Rosenfeld JM, Alvarez JG, Noel JP, Nicolaou KC, Evans RM, Mol Cell 2003 Apr;11(4):1079-92. PMID:12718892
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (1osh.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 1OSH
  • CSU: Contacts of Structural Units for 1OSH
  • Likely Quarternary Molecular Structure file(s) for 1OSH
  • Retrieve 1OSH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OSH from S2C, [Save to disk]
  • View 1OSH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OSH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OSH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1osha_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1osh] [1osh_A]
  • SWISS-PROT database: [Q96RI1]
  • Domain organization of [NR1H4_HUMAN] by SWISSPFAM
  • Domain found in 1OSH: [HOLI ] by SMART
  • Other resources with information on 1OSH
  • Community annotation for 1OSH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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