1OT9 Luminescent Protein date Mar 21, 2003
title Cryotrapped State In Wild Type Photoactive Yellow Protein, I With Continuous Illumination At 110k
authors S.Anderson, S.Crosson, K.Moffat
compound source
Molecule: Photoactive Yellow Protein
Chain: A
Synonym: Pyp
Engineered: Yes
Organism_scientific: Halorhodospira Halophila
Organism_taxid: 1053
Gene: Pyp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 63
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.206 66.206 40.514 90.00 90.00 120.00
method X-Ray Diffraction, 2 Modelsresolution 1.00 Å
ligand HC4 enzyme
related structures by homologous chain: 1OT6, 1OTB
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceShort hydrogen bonds in photoactive yellow protein., Anderson S, Crosson S, Moffat K, Acta Crystallogr D Biol Crystallogr 2004 Jun;60(Pt 6):1008-16. Epub 2004, May 21. PMID:15159559
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (1ot9.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1OT9
  • CSU: Contacts of Structural Units for 1OT9
  • Likely Quarternary Molecular Structure file(s) for 1OT9
  • Structure Factors (579 Kb)
  • Retrieve 1OT9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OT9 from S2C, [Save to disk]
  • View 1OT9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OT9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1OT9 from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OT9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ot9a_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ot9] [1ot9_A]
  • SWISS-PROT database: [P16113]
  • Domain organization of [PYP_HALHA] by SWISSPFAM
  • Domain found in 1OT9: [PAS ] by SMART
  • Other resources with information on 1OT9
  • Community annotation for 1OT9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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