1OVQ Structural Genomics, Unknown Function date Mar 27, 2003
title Solution Structure Of The Hypothetical Protein Yqgf From Esc Coli
authors D.Liu, Y.S.Wang, D.F.Wyss
compound source
Molecule: Hypothetical Protein Yqgf
Chain: A
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Yqgf Or B2949 Or C3535
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
methodSolution NMR
related structures by homologous chain: 1NMN
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • 3'-5'-exodeoxyribonuclease a...


  • Primary referenceSolution structure of the hypothetical protein YqgF from Escherichia coli reveals an RNAse H fold., Liu D, Wang YS, Wyss DF, J Biomol NMR 2003 Dec;27(4):389-92. PMID:14512736
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (900 Kb) [Save to disk]
  • Biological Unit Coordinates (1ovq.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 1OVQ
  • Original NMR restraints for 1OVQ from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1OVQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OVQ from S2C, [Save to disk]
  • View 1OVQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OVQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OVQ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ovqa_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ovq] [1ovq_A]
  • SWISS-PROT database: [P0A8I1]
  • Domain organization of [RUVX_ECOLI] by SWISSPFAM
  • Domain found in 1OVQ: [YqgFc ] by SMART
  • Other resources with information on 1OVQ
  • Community annotation for 1OVQ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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