1OWJ Hydrolase date Mar 28, 2003
title Substituted 2-Naphthamidine Inhibitors Of Urokinase
authors M.D.Wendt, T.W.Rockway, A.Geyer, W.Mcclellan, M.Weitzberg, X.Zhao R.Mantei, V.L.Nienaber, K.Stewart, V.Klinghofer, V.L.Giranda
compound source
Molecule: Urokinase-Type Plasminogen Activator
Chain: A
Fragment: Residues 179-423
Synonym: Upa, U-Plasminogen Activator
Ec: 3.4.21.73
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Plau
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.253 R_Free 0.344
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.160 53.000 82.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand 155 BindingDB enzyme Hydrolase E.C.3.4.21.73 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of novel binding interactions in the development of potent, selective 2-naphthamidine inhibitors of urokinase. Synthesis, structural analysis, and SAR of N-phenyl amide 6-substitution., Wendt MD, Rockway TW, Geyer A, McClellan W, Weitzberg M, Zhao X, Mantei R, Nienaber VL, Stewart K, Klinghofer V, Giranda VL, J Med Chem 2004 Jan 15;47(2):303-24. PMID:14711304
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1owj.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 1OWJ
  • CSU: Contacts of Structural Units for 1OWJ
  • Likely Quarternary Molecular Structure file(s) for 1OWJ
  • Structure Factors (59 Kb)
  • Retrieve 1OWJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OWJ from S2C, [Save to disk]
  • Re-refined 1owj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OWJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OWJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OWJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1owja_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1owj_A] [1owj]
  • SWISS-PROT database: [P00749]
  • Domain organization of [UROK_HUMAN] by SWISSPFAM
  • Domain found in 1OWJ: [Tryp_SPc ] by SMART
  • Other resources with information on 1OWJ
  • Community annotation for 1OWJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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