1OXF	Expansion of the Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins	date
authors	Bae, J.Hyun., Rubini, M., Jung, G., Wiegand, G., Seifert, M.H., Azim, M.K., Kim, J.S., Zumbusch, A., Holak, T.A., Moroder, L., Huber, R., Budisa, N.
compound		source
symmetry		R_factor R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.69
ligand	4IN, 5ZA	enzyme
related structures	by homologous chain: 1Q73, 1RMO
Gene Ontology	Chain Function Process Component A
Primary reference	Expansion of the genetic code enables design of a novel "gold" class of green fluorescent proteins., Hyun Bae J, Rubini M, Jung G, Wiegand G, Seifert MH, Azim MK, Kim JS, Zumbusch A, Holak TA, Moroder L, Huber R, Budisa N, J Mol Biol 2003 May 16;328(5):1071-81. PMID:12729742

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (1oxf.pdb1.gz) 38 Kb LPC: Ligand-Protein Contacts for 1OXF CSU: Contacts of Structural Units for 1OXF Likely Quarternary Molecular Structure file(s) for 1OXF Retrieve 1OXF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OXF from S2C, [Save to disk]

View 1OXF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OXF

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OXF, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1oxfa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1oxf_A] [1oxf] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 1OXF

Community annotation for 1OXF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---