1OY1 Unknown Function, Structural Genomics date Apr 03, 2003
title X-Ray Structure Of Elbb From E. Coli. Northeast Structural G Research Consortium (Nesg) Target Er105
authors J.Benach, W.Edstrom, L.C.Ma, R.Xiao, T.B.Acton, B.Rost, G.T.Montel J.F.Hunt, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Putative Sigma Cross-Reacting Protein 27a
Chain: A, B, C, D
Synonym: Scrp-27a, Putative Enhancing Lycopene Biosynthesis 2;
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Elbb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: C 2 2 21
R_factor 0.216 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.108 105.522 165.102 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.95 Å
ligand MSE enzyme
related structures by homologous chain: 1VHQ
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (1oy1.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (1oy1.pdb2.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 1OY1
  • CSU: Contacts of Structural Units for 1OY1
  • Likely Quarternary Molecular Structure file(s) for 1OY1
  • Structure Factors (316 Kb)
  • Retrieve 1OY1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OY1 from S2C, [Save to disk]
  • Re-refined 1oy1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1OY1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OY1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OY1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oy1a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1oy1b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1oy1c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1oy1d_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oy1_C] [1oy1_B] [1oy1_D] [1oy1_A] [1oy1]
  • SWISS-PROT database: [P0ABU5]
  • Domain organization of [ELBB_ECOLI] by SWISSPFAM
    • Other resources with information on 1OY1
  • Community annotation for 1OY1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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