1OZV	Transferase	date	Apr 09, 2003
title	Crystal Structure Of The Set Domain Of Lsmt Bound To Lysine
authors	R.C.Trievel, E.M.Flynn, R.L.Houtz, J.H.Hurley
compound		source
Molecule: Ribulose-1,5 Bisphosphate Carboxylaseoxygenase L Subunit N-Methyltransferase, Chloroplast; Chain: A, B, C Synonym: [Ribulose-Bisphosphate-Carboxylase]-Lysine N- Methyltransferase, Rubisco Methyltransferase, Rubisco Lsmt, Ec: 2.1.1.127 Engineered: Yes		Organism_scientific: Pisum Sativum Organism_common: Pea Organism_taxid: 3888 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pdest14
symmetry	Space Group: I 2 2 2	R_factor 0.227 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 131.960 156.900 267.550 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.65 Å
ligand	LYS, SAH	enzyme	Transferase E.C.2.1.1.127 BRENDA
related structures	by homologous chain: 1MLV
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Mechanism of multiple lysine methylation by the SET domain enzyme Rubisco LSMT., Trievel RC, Flynn EM, Houtz RL, Hurley JH, Nat Struct Biol 2003 Jul;10(7):545-52. PMID:12819771

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (230 Kb) [Save to disk] Biological Unit Coordinates (1ozv.pdb1.gz) 76 Kb Biological Unit Coordinates (1ozv.pdb2.gz) 77 Kb Biological Unit Coordinates (1ozv.pdb3.gz) 77 Kb Biological Unit Coordinates (1ozv.pdb4.gz) 224 Kb LPC: Ligand-Protein Contacts for 1OZV CSU: Contacts of Structural Units for 1OZV Likely Quarternary Molecular Structure file(s) for 1OZV Structure Factors (653 Kb) Retrieve 1OZV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OZV from S2C, [Save to disk] Re-refined 1ozv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OZV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OZV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OZV, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ozva1, region A:311-487 [Jmol] [rasmolscript] [script source]     - Domain d1ozva2, region A:50-310 [Jmol] [rasmolscript] [script source]     - Domain d1ozvb1, region B:311-488 [Jmol] [rasmolscript] [script source]     - Domain d1ozvb2, region B:48-310 [Jmol] [rasmolscript] [script source]     - Domain d1ozvc1, region C:311-488 [Jmol] [rasmolscript] [script source]     - Domain d1ozvc2, region C:49-310 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ozv_A] [1ozv] [1ozv_B] [1ozv_C] SWISS-PROT database: [Q43088] Domain organization of [RBCMT_PEA] by SWISSPFAM Domain found in 1OZV: [SET ] by SMART

Other resources with information on 1OZV

Community annotation for 1OZV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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